23 December, 2009

Evolution of the Immune System

One of the major arguments of Michael Behe in the Dover trial, in which intelligent design creationism was shown up to be the vacuous nonsense that it is, was that the immune system is too complex to have evolved through purely natural processes. I think its reasonable to assume that for someone to make such a wide, sweeping claim they must be up to date with the literature...

Not Behe.

In fact, when presented with a stack of thick textbooks, all of which included chapters on the evolution of the immune system, Behe had to admit that he hadn't read any of them. Not one!

Let's just say that his honour, Judge Jones, was not amused. And, of course, the rest is history.

Well in the January edition of Nature Reviews Immunology, there is an interesting commentary on the very subject that Behe knows nothing about, and yet feels qualified enough to dismiss - evolution of the immune system.

How did our complex immune system evolve?

Max Cooper and Brantley Herrin discuss the evolution of innate and alternative adaptive immune systems for defence purposes and conclude that successful vaccines and other therapeutic manipulations of the immune system will require a composite strategy.

Read More...

10 December, 2009

CHEAT!!


We shall never forget...

Also, what the hell was McShane doing?

01 December, 2009

Poetry Corner

Sorry I haven't been posting lately but this is due to a combination of moving to a new city, starting a new job and no internet access at home. I'm getting hooked up to broadband in a few weeks time so hopefully I'll be back then.

Oh and I've had to turn off anonymous commenting due to a recent spate of spam comments. Maybe they are hitting back....

In the mean time, here is a poem to keep you amused:

Iggy Wiggy was a worm
A lovely worm was he
One day upon the railway track
A train he did not see

14 November, 2009

The Most Important Thing In The World...

That's right. Football.



C'mon Ireland!!!!!!




For those who don't know, Ireland are in a two-leg playoff with France to reach the World Cup Finals in South Africa next summer. France are 25 places ahead of Ireland in the world rankings (9th vs 34th) but I still think we can do it. The French public (and some of the players) can't stand their manager, Raymond Domenech. He has neglected to pick players before based on their star sign!!! And he even got booed by the crowd at the French masters last week. Look at the players laughing as the crowd boo him!! - video is of poor quality


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Edit: We played quite well but lost 1-0 thanks to a deflected shot........ Gutted!

06 November, 2009

Goodbye Ireland, Hello England

As the title suggests, yesterday I packed my bags and moved to England. North London to be precise. I start work on Monday as an associate editor at a major scientific publishing company. I am ten parts excited to one part nervous.

Today will be spent apartment hunting and doing a few bits and pieces to prepare. I'm not sure how much time I'll have to post here in the near future as I'm sure it'll be a hectic first few weeks but I will do my best to continue this blog as time allows.

Roll on Monday...!!

03 November, 2009

Size Matters

Checkout this page from the University of Utah website. It compares the size of various items, starting with a coffee bean, ending up with microscopic items, such as an E. coli bacterium, an antibody and even a carbon atom.


Simply scroll right to reduce the scale.
Brilliant!

(hat tip: Froggie @ SMRT)


21 October, 2009

Human Chromosome 2 Fusion

This topic has been discussed many times over on the interwebz, but I thought I'd just add my own explanation of it anyway...

A valid question one might ask about the evolutionary relationship between humans and chimpanzees is this - why do the human and chimpanzee genomes have different numbers of chromosomes when evolutionary theory insists that we are so closely related?

The story of how this apparent stumbling block was resolved is one of the greatest triumphs for evolutionary theory over ID/creationism.

The Great Apes, as in chimps, gorillas and orangutans, have 24 pairs of chromosomes compared to 23 pairs in humans. This has been known to be the case since the 1970s. Back then, it was a potential problem for evolutionary theory, because it had to be explained how there was a difference between these related species.

Creationists, of course, were happy that the numbers were different. This confirmed for them that humans are unique and were designed with 23 pairs of chromosomes. Evolutionists, on the other hand, came up with a testable hypothesis (real science) to explain the differences...

One initial possibility was that humans may have lost a pair of chromosomes following divergence from the rest of the Great Apes, but this was widely ruled out as loss of whole chromosomes would almost certainly be fatal. So the generally accepted hypothesis was that two chromosomes must have fused together to form a new longer chromosome, thus reducing the number of pairs from 24 to 23. The implication of this, of course, was that if no evidence of a fusion event could be found, then evolutionary theory would be in big trouble.

Reply Edit


Wild Horses 66, Domestic Horses 64, and Donkeys 62 Chromosomes

When I confront creationists on the issue of Human/Ape chromosome numbers, I use all the science mentioned in this blog, plus I add information from the genus Equus.

I first ask creationists if Horses, Donkeys, and Zebras are related. They often reply “yes, they are of the same created kind”, often noting that Horses, Zebras, and Donkeys can breed with each other and that they are all descendants of the 2 horses on Noah’s ark 4000 years ago. Then I reveal their chromosome numbers.

Wild Horses (Equus ferus przewalskii) have 66 chromosomes. Domestic horses (Equus caballus) have 64 chromosomes, and Donkeys have 62 chromosomes. The cross of a domestic horse and a donkey produces a mule or hinney with 63 chromosomes. Crossing a wild horse with a domestic horse produces a horse with 65 chromosomes.

If Equus species that range in chromosome number from 62 to 66 can all descend from a common ancestor, why can’t apes (48 chromosomes) and humans (46 chromosomes) descend from a common ancestor?

I also ask them if any humans have more than 46 chromosomes. Every time but once, they have said no. Then I inform them that people with Down’s Syndrom have 47 (due to 3 copies of chromosome 21).


Successful reproduction in individuals with different chromosome numbers is also known to occur in humans, as is seen with individuals with a Robertsonian translocation (a disorder where a full or partial chromosome fuses to another). More than 1 in 1000 people have Robertsonian translocations and can still reproduce successfully. Not all of their offspring will survive, but some will, which is all that matters. I'm not going to get into the Mendelian genetics of it, but its roughly a 1 in 4 survival chance. Now, the offspring with the same fusion (it will be passed on to 50% of the viable offspring) will have the same fertility as the parent, so will also be able to reproduce with a 1 in 4 chance. And so on...

Here comes the amazing bit...

Think back to our ancestor who had the original fusion event. Following generations of reproduction, the individuals with the fusion event would slowly accumulate in a population, although still be a minority. When two individuals with the fusion event mate, because they have identical chromosome numbers, they will have 100% fertility. This 4-fold increase in fertility will cause the population with the fusion event to continue to mate with each other. Similarly, the larger population without the fusion event will prefer to mate with each other, and not the new population.

As I hope you can see, this would potentially contribute to reproductive isolation and the beginnings of speciation...!

So the fact that we have different chromosome numbers to the Great Apes has been lucidly and elegantly explained by evolutionary theory. This was done by making a testable hypothesis and then doing the research. Contrast that to the complete lack of an explanation or research from ID creationism. Fusion events have also been observed in the genomes of other mammals, and always verify expected lineages. An excellent additional bonus is that it provides us with a potential reproductive explanation for speciation.

*Ahem*



Pwnage.

Read More...

20 October, 2009

An Hour In The Darwin Centre

Not too long ago, I reported that the Natural History Museum in London had opened a new permanent section called the Darwin Centre. Well, I was in London a few weeks ago for an interview, so I popped in to have a look. Unfortunately I only had about an hour to spare so I wasn't able to really get stuck into each exhibit but on the whole, although a little light on all things Darwin, it is very impressive.


When I say it was a little light on Darwin, I mean it was not what I expected. I presumed there would be whole sections on Darwin the man, Darwin the ecologist, Darwin the author, etc......

.......but no, the whole Darwin Centre is actually more an explanation of the scientific method than anything to specifically do with Darwin. Not that that's a bad thing. It's actually a very good thing. As a scientist, I perhaps take for granted the processes which we undergo when we set up experiments, observe and record the results and then come to scientific conclusions. But the non-scientific public may not necessarily understand these processes and hence may harbour concerns about some of the more seemingly outlandish and far-fetched claims made by science.

Here at the Darwin Centre, the scientific method is broken down into multiple hi-tech stations with an abundance of information available through an impressive display of LCD touchscreen monitors. The visitor interacts with cyber scientists to learn how an experiment is done and how to analyze results.



Read More...

08 October, 2009

Saturn's New Ring

I don't have the words to do this justice, so all I'm gonna say is...

WOW!!!



(story here)

(original paper here)

05 October, 2009

Do you want the good news or the bad news...?

OK lets start with the bad news...

I injured the medial colateral ligament in my right knee (grade I-II) playing 5-a-side football (soccer for our American friends) last week. It hurt for a while but over the weekend it improved, so much so that I walked confidently into my appointment with the consultant this morning expecting to be sent on my merry way with the all clear.

My confidence was misplaced.

I was told that my knee joint is still 'open' and I have to wear a brace for the next 4-6 weeks. It looks a bit like the picture shown above. I also need to use crutches so I've been restricted to hobbling around asking people to do this, that and the other for me.

So it's safe to say my day started off pretty badly.

But...

When I arrived in work and logged into my computer I was greeted by a very nice email. I traveled to London last weekend for an interview at a leading scientific publishing company and, low and behold, turns out I only went and got the job!

Hurrah!

24 September, 2009

Ronnie Wood at lunch time!!

I found out earlier today that Ronnie Wood (from the Rolling Stones, kids) was planning to play in a shopfront on Grafton Street. It's part of the Arthur's Day, which is being celebrated all over Ireland today. 'Arthur' being Arthur Guinness, and 'Day' being Guinness' 250 anniversary.

I work at the top of Grafton Street, so I called over to have a look see.......oh yeah!!!!




17 September, 2009

Interview with an Event Horizon

In the recent edition of Nature there is a rather odd interview. Not wanting to be outdone by Oprah and Ellen, they have gone for an extreme A-list guest. None other than...

...an Event Horizon!!

This should be interesting.

When asked about the origin of life, the Event Horizon answers:

Biological life as you know it originated in your universe 13½ billion years ago in the heart of heated comets. Heat and cosmic radiation bombarded the carbon dioxide, methanol and ammonia they carried. As they neared their star during their elliptical orbits, the comets' frozen cores thawed, allowing those chemicals to interact in a semi-liquid medium and form rudimentary organic compounds — proteins and amino acids, the building blocks of life. Streaking past the six worlds of this solar system, they rained down those organic compounds in dust that settled in the planet's atmosphere and, eventually, onto its surface. On those planets with a heat source and a liquid medium, these compounds formed lipid membranes that facilitated the formation of self-replicating cells. These evolved into bacteria that over eons developed into simple bio-organisms, the first step in the slow, inexorable climb towards complexity. This process has repeated itself countless times throughout the cosmos over billions of years. This is why your universe teems with biological life.

Non-biological life incubates in the cool ether of dark matter shaped by processes beyond your current level of understanding. However, if our experience is any indication, in time you will come to know such life forms and recognize them as your brothers. In every universe we've explored, biological and non-biological life forms inevitably join together and lift each other to magnificent new heights.


OK, sounds reasonable-ish.


But when asked if God exists, the Event Horizon has this to say:


Everything in existence has a creator, ad infinitum. Before the Big Bang there was neither time nor space nor matter, but consciousness. Formless. Eternal. Contemplating its creator. And contemplating others like itself that might exist across the infinite bubbles of reality. As time did not exist, we cannot say whether this omni-consciousness existed for a millisecond, a millennium or an eternity. But it jabbed with its thoughts at the weathered fabric between realities and poked an infinitesimal hole. And the entirety of a neighbouring universe — endless space and matter — flooded through that pinhole in a spectacular cosmic eruption. The omni-consciousness found that matter, gave it form, and it revelled in its multitudinous shapes. It discovered that matter — moulded by the flame of time and the winds of evolution — could eventually give rise to its own self-aware components, part of the omni-consciousness, yet separate from it. It delighted in each of the quadrillions of consciousnesses that flickered into and out of existence. It no longer knew loneliness. Time, space and matter continued to expand — prodded into acceleration by the omni-consciousness — hoping in vain to fill every crevice of infinity. This has happened in every bubble of the transreality-froth we've explored.


Hmmm, if you listen hard enough you can hear the gerbil at the Discovery Institute frothing at the mouth as he turns on his laptop...


Of course, this interview is just a bit of a joke.

The 'interviewer' is a chap named Mercurio Rivera, a science fiction writer. The reason Nature have published this is to celebrate the 50th anniversary of the inaugural publication of SETI, entitled "Searching for Interstellar Communication". They have also published an article by Fred Kaplan reflecting on the origins, impacts and legacy of this paper and of SETI itself.

Happy birthday!!

16 September, 2009

Snake foot - or just dinner fighting back?

Snakes are great!

They seem to regularly provide us with a lot of excellent examples of evolution. A few weeks ago it was the fact that they can lose and re-gain the ability to lay eggs.

Now one has been found in China with a freakin leg!


What we probably see here is an example of a suppressed gene function becoming reactivated.

Now some have legitimately expressed concerns that this is simply a swallowed lizard which has punched it's way through the snake, hence the protruding leg. If this is the case, fair enough. Let's wait and see. But snakes have been found in the past with legs or leg-like protrusions, so if it is an actual snake leg, it isn't an isolated incident.

The main point is that the genes for leg growth are clearly present in the genome. Snakes evolved from limbed ancestors and then lost the gene function, but not the gene, that controls limb growth and development.

(From Pharyngula)

15 September, 2009

Presuppositionalist Nonsense Part III

I put forward the argument in Presuppositionalist Nonsense Part I and Part II that the law of non-contradiction is not necessarily universal, thus refuting the position of presuppers who claim, without proof, that the laws of logic are abstract, universal and invariant. This also invalidates their claim that God's nature is universal, since the laws of logic are apparently a reflection of his nature.


So, the presuppositionalist worldview is defunct.

But why leave it at that?

The non-universality of the law of non-contradiction is only one reason why presuppositionalism is wrong. By exploring the claims of its followers it quickly becomes obvious that they are riddled with self-refuting statements. For instance, the presupper claims that their foremost presupposition is that God exists and is the source of truth, knowledge, logic, etc...But where does the presupper get this claim from? How can they account for it?

In order to make such a claim, the presupper must first presuppose the existence of the very same things that God is supposedly the source of - truth, knowledge and logic

- The presupper presupposes truth as they already accept their claim to be true.

- The presupper presupposes knowledge as the very act of making the claim is itself a knowledge claim.

- The presupper presupposes logic as they use logic to arrive at their claim.

So the original presuppositions being made are actually that truth, knowledge and logic exist. Therefore it isn't necessary to claim that a magical being accounts for these concepts, since they are already being presupposed in order to make such a claim. Essentially, if a presupper is honest they would be forced to admit that they are in the same position as any other person with regards the origin of concepts such as truth, knowledge and logic - they don't know. I would posit that there is no exact origin of these things since they are axiomatic. They are just abstract concepts that describe reality.

Read More...

09 September, 2009

Darwin Centre Unveiled

From The Guardian:

The Natural History Museum today unveiled its new £78m Darwin Centre, which shelters millions of plant and animal specimens within a giant concrete blob.

Among the previously hidden gems to go on display will be the centre's scientists, who will work in full view of the public when the attraction is opened next week.

Many of the experts said they were relishing the chance to perform in glass-fronted laboratories, some linked by intercom so visitors can ask about the work they are doing.



Sounds pretty cool - although a bit gimmicky. I can't imagine the experts are seriously relishing the chance to do research in full view of the public. I'm sure many members of the public will have interesting questions and comments but mixed in with that will be the inevitable trouble-makers simply knocking on the glass and buzzing in to ask where the toilets or the cafeteria are.

Still, I'm in London at the end of the month so I'll pop in and have a look...


30 August, 2009

Oye tio!! - voy a Espana

Holidays!!

I'm flying to Malaga in Southern Spain tomorrow morning, where I'm going to spend a week with some friends. We will travel straight to Tarifa, which is a short ferry trip from Tangiers, Morroco and spend a few days around there. Then we head to Sevilla for a few days in the city before flying back home.

I probably won't be on the net much if at all... hasta luego!!

27 August, 2009

Presuppositionalist Nonsense Part II

In Presuppositionalist Nonsense Part I, it was shown that the request of a presuppositionalist for an account of the abstract, universal, invariant laws of logic is a dishonest approach as it already assumes, with no verification, that the laws of logic are indeed abstract, universal and invariant. The onus is actually on the presupper to prove this claim, which they unsurprisingly never do. Of course, to do so amounts to an impossibility since they would literally have to demonstrate that no law of logic has ever been broken at any time since the universe existed and that no law of logic will ever be broken in the future.

It is, however, much easier to disprove as one example of a law of logic not holding is all that is needed. In Part I, the example of relativity was used to show that the law of non-contradiction is not universal. I was challenged by a presupp commenter called Sye TenB that this example did not apply since different perspectives do not count as 'the same way', which is a necessary condition of the law of non-contradiction.

I disagreed with him but I took his criticism on board nonetheless and now I present a slight variation on my argument which I hope will clear it up. Instead of two people and a train, simply imagine the perspective of one person sitting at a table looking at a bunch of flowers. From the perspective of the person, the flowers are not moving. However, this person knows some basic cosmology and is thus aware of the fact that the earth's rotation is moving the flowers. I submit that this person can simultaneously appreciate the fact that the flowers are thus moving and not moving at the same time, and crucially, in the same way.

Now I can already hear Sye saying that the person is simply imagining two different perspectives and so this still isn't in the 'same way'. But, again, I would disagree. The person doesn't have to literally imagine themselves looking at the flowers from an outer space perspective in order to know that they are moving. They can simply have knowledge of the fact that it is moving with the earth's rotation. So, in my opinion it's possible to look at an object and simultaneously think of it as both moving and not moving at the same time and in the same way.

Anyway, I promised another example of the law of non-contradiction not holding and here it is...

"We have received several complaints accusing our newspaper of sub-standard journalistic ethics. We thus make this pledge. The last sentence in tomorrow’s edition of the newspaper will be true."

This is a grammatically correct meaningful sentence. It imparts information on a particular subject. So, after reading today's paper, you check the last two sentences which read:

"Correction: we regret to inform our readers of a mistake. The last sentence in yesterday’s edition of the newspaper was not true."

Again, a grammatically correct meaningful sentence. It similarly imparts information on a particular subject.

Now you remember from yesterday's edition that the last sentence in today's edition would be true. This means that the original sentence in yesterday's edition is no longer to be considered true. The result is that the first sentence is both true and not true at the same time and in the same way, thus breaking the law of non-contradiction. Of course, a presupper will deny this to the end, perhaps by saying that the first sentence is not true and false at the same time, since it was originally true yesterday, and then only became false today. But if it only became false today, then that means the last sentence in today's edition is also false, meaning the first sentence is true again. So it most definitely is true and not true at the same time and in the same way.

As I explained in Part I, this breakdown in the law of non-contradiction is consistent with the fact that the laws of logic are man-made entities. They are useful guidelines which describe how reality seems to work. This is not consistent, however, with the presuppositionalist worldview in which the laws are logic, as derived from God's nature, are universal and invariant.

A common presupper response to this would be something like:

Could the universe have both existed and not existed before man came along and created the law of non-contradiction?

This is just a silly question. The existence of the law of non-contradiction is not necessary for something to exist in a non-contradictory way. Logic does not determine reality, reality determines logic.

Now the following is not a scenario that I believe in, but just for fun lets consider for a moment the possibility that the universe did exist and not exist at the same time...

I'd just like to repeat that last sentence to deter potential quote miners.

Now the following is not a scenario that I believe in, but just for fun lets consider for a moment the possibility that the universe did exist and not exist at the same time...

In what way could we measure or observe this? Let's take one at a time:

1) If the universe does exist and not exist at the same time then, as one part of that dichotomy, it would necessarily exist. Since we are here observing the universe, I think it is safe to assume that it does indeed exist.

2) If the universe does exist and not exist at the same time then, as one part of that dichotomy, it would necessarily not exist. By definition, there would be no trace of this non-existent universe to measure or observe, and indeed we have no trace of such.

So from our viewpoint, there is no evidence to falsify the hypothesis that the universe actually does exist and doesn't exist at the same time. The presupper will jump on the idea of the universe not existing and extrapolate to suggest that this means your consciousness also doesn't exist. But what they fail to consider is that the original question is whether the universe (or one's consciousness) can both exist and not exist at the same time, not just whether it doesn't exist. As I have shown, this is not inconsistent with what we observe, as we do in fact exist, and we cannot measure our non-existence.

The very fact that this is difficult to understand or comprehend shows that the law of non-contradiction is a man-made entity, which describes reality with a high degree of precision, but is not necessarily universal or invariant.

To sum up, in my view logic is only applicable to human thought and reasoning, meaning it is not universal. Is logic necessary for a rock to exist or the sun to shine? No, it is only necessary for humans to think and reason about these things. Consciousness uses logic to interpret and interact with reality. Logic does not exist outside of consciousness. And even at that, in rare cases it does not always hold true, leading to paradoxes and contradictions. These contradictions refute the presuppositionalist's worldview, since they require the laws of logic to be universal and invariant.

In Part 3 I will discuss how the presuppositionalist's own position on such things as senses, reasoning and certainty is self-refuting and how their claimed presupposition that God is the source of logic and certainty is fallacious.


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24 August, 2009

Who is the Intelligent Designer? - Elusiveness by Design

I recently received a few comments on an earlier post I did on a flaw in intelligent design (ID) theory. Essentially, my point was that knowledge of human design cannot be used as a basis for recognizing supernatural design. It can only be used as a basis for identifying other human design. The point was made by the commenter, Michael, that I was wrong in my approach as I was attacking the notion of a supernatural designer, something which ID does not necessarily claim.

At first glance, this may seem like a perfectly reasonable criticism. If you accept it, then you could say that I am committing the logical fallacy of attacking a strawman, as I am taking an argument that ID does not hold and attacking it. However, this is one of the core problems with ID. They do not publicly hold the position I am attacking for that very reason, because it is so open to attack. Rest assured, they certainly do hold the position privately - just ask any one of them and they'll probably admit it. It is this unwillingness to speculate on the identity on the designer in public, I will argue, that contributes to the status of ID as an unfalsifiable theory, thus rendering it pseudoscientific.

When asked certain questions, IDists claim that ID says nothing about this or nothing about that. This is because if they try to expand upon the theory of an intelligent designer it quickly turns into religion. So they prefer to make only one claim, and a flawed claim to boot, and then refuse to expand on that claim. This means that ID adopts an ambiguous position with regards any direct prerequisites or consequences of ID being true. Luckily, this does not stop others from exploring the shaky scaffold that props up the notion of ID.

Breaking it down, the designer has to be either supernatural or natural. Let's take these one at a time:

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19 August, 2009

Daemon

I don't read all that much fiction - perhaps reading the Bible as a kid in Sunday School put me off - but when I picked up Daniel Suarez's 'Daemon' in Newcastle airport about a month ago the blurb on the back intrigued me:

An infernal web of autonomous computer programs, Sobol's Daemon feasts on the lifeblood of our hyper-connected society: information. Gathering secrets and stealing identities, it soon has the power to change lives as well as the power to take them. Those who serve the Daemon are rewarded; those who defy it are eliminated.

Although it was probably the line underneath this from a Google employee that convinced me to reach for my wallet:
"Daemon is to novels what the Matrix was to movies. It will be how other novels that rely on technology are judged..."

If you like science-based techie fiction with plenty of twists and turns then this book is definitely for you. I certainly enjoyed it. It's going to be made into a movie, that's for sure. The science is mind-bending at times but never implausible. I won't say too much but, interestingly, the main bad guy is killed in the very first paragraph, an event which triggers pre-planned mayhem across the world. This means the police are left trying to shutdown a dead criminal's intricate series of cyber-booby traps with no chance of catching or punishing him.

13 August, 2009

Presuppositionalist Nonsense Part I

Following a few recent encounters with some presuppositionalists, I have given some thought to their position on the laws of logic. It seems clear to me that the laws of logic are simply general rules that we humans use to interpret the world around us. However, the presupper will have you believe they have some sort of transcendent mystical origins and are in fact a reflection of God's nature.

Let's just say I am skeptical of this.

A favourite starting point for their onslaught of idiocy is to ask a non-believer for an account of the abstract, universal, invariant laws of logic. This initial question commits the fallacy of the loaded question. For example it's like asking someone "Have you stopped beating your wife?". In this case, regardless of the answer, you are automatically insinuating that the person beats his wife when there is no justification for this. Similarly, presuppositionalists are loading their question with the 'fact' that the laws of logic are abstract, universal and invariant and then simply asking the non-believer to account for that fact, thus putting their opponent on the defensive. This makes a non-believer think that they should indeed have an account for these proposed properties of the laws of logic, even though the presupper has never actually proven their initial premise. It's just a devious deflection tactic.

As for these proposed properties of logic, I for one don't accept that the laws of logic are necessarily universal or invariant. I will, however, concede that they are abstract in that they are not physical entities but instead they are used as a tool for human consciousness to describe physical phenomenon. I will not say that I am certain that they are not universal or invariant, but I think there is room for debate. For starters, I doubt whether it can be proven that they are definitely universal or invariant as this would be an impossible task. On the other hand, if the laws of logic are not universal or not invariant, it can easily be proven by finding an example of such a case.

So, if it can be shown that a law of logic does not hold in any particular situation, then this would automatically refute the presuppositionalist position, as it would disqualify their claim that the laws of logic, and thus the character of God, is unchanging. This would be devastating for their position as it would not be consistent with their claims to certainty.

So are there any incidences where the law of logic do not hold?

Well, yes.

Riiiight!!!! If the law of non-contradiction was proven wrong, it would also necessarily NOT be proven wrong as well.

Now the above is not a strawman (scmike says it here and Sye says something similar in the sidebar here). Let's examine what this means and if it's a rational response. Essentially, the presupper is claiming that if you show that the law of non-contradiction is wrong in one instance, then contradictions are universally acceptable. This means that that 'A' can equal 'not A' whenever you want it to, hence 'proven wrong' can become 'not proven wrong' - and hey presto, you have just proven that the law of non-contradiction is actually true!!!

There is one word and one word only for that position - pathetic

First of all, we did not show that the law of non-contradiction is wrong, just that it is not universal. It is still a useful law. It still works in most, if not all, cases from an individual's perspective. It only seems to break down when multiple perspectives are considered at the same time.

Secondly, extrapolating from this to say that any contradictions are now allowed is just a juvenile response. It leads to an infinite regression of absurdity as demonstrated here:

Non-believer - "The law of contradiction does not hold in this particular instance, therefore it is not universal"

Presupper - "If the law of non-contradiction is wrong, it would also necessarily NOT be wrong as well. Hence the law of non-contradiction is right"

Non-believer - "If the law of non-contradiction is right due to fact that it has been proven wrong, then it is also necessarily NOT right. Hence the law of non-contradiction is wrong"

Etc....ad nauseum

So the assertion that if the law of non-contradiction was proven wrong, it would also necessarily NOT be proven wrong as well is clearly absurd and should be dismissed as such.

To conclude part I of this post, I just want to re-emphasis that the original claim of the presupper is that the laws of logic are universal. This is impossible to prove, so there is a huge weight of burden on the presupper to back up this claim, and as such they never do. They simply say it, again and again and again.

What is possible though, and quite easy in fact, is to disprove this claim by simply finding one example of a law of logic not holding true. One single example from a whole universe of possibilities is all it takes to refute the presupper claim.

Well, relativity is a perfect example of this. It breaks the law of non-contradiction as it allows for an object to be both moving and not moving at the same time and in the same way. I stress that this is not equivocation, although the presupper will undoubtedly claim otherwise in a vain attempt to prevent their bubble of semantic lies from bursting.

In short, the presupper position is refuted.

More to follow in Part II

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What Came First - The Snake or the Egg?

Well, in the case of the Arabian sand boa, Eryx jayakari, it seems that the answer is - both.

Although many species of snake lay eggs, boas generally give birth to live offspring. In the journal Evolution, Vincent Lynch and Günter Wagner used phylogentic analysis to show that two species of the genus Eryx re-evolved the ability to lay eggs, meaning that oviparity (egg-laying) to viviparity (live-birth) is reversible. Specifically, these snakes appear to have re-evolved oviparity nearly 60 million years after the initial transition to viviparity.

Evolution: Reinventing the egg

There is a short commentary on this study in the recent edition of Nature:

Many vertebrates have abandoned egg-laying for live birth. But despite some suggestive examples, convincing evidence for the evolutionary reversal of this trait has been lacking until now.

Vincent Lynch and Günter Wagner at Yale University, New Haven, carried out a phylogenetic analysis of 41 species of boa snake using recent DNA data. The most parsimonious explanation of the phylogeny, they conclude, is that the Arabian sand boa, Eryx jayakari (pictured ), one of only two species of egg-laying boa, re-evolved this ability some 60 million years after the transition of the group to live birth.

E. jayakari also lacks the egg tooth other oviparous snakes use to tear their way out of the egg, additional evidence that egg-laying was lost and reacquired, according to the authors.

10 August, 2009

Open Invitation to Scmike

This post is an open invitation to scmike to continue the conversation started over at Ray Comfort's blog. Of course, scmike has already been shown up for his dishonesty at several sites, including over at Ryk's. But that won't stop him. You see, scmike is a presuppositionalist and believes that God is the only possible source of logic. He has never proven this and simply repeats the same semantic dance again and again and again (see here for an example of a similar failed approach by Sye TenB). It's an easy method of argumentation but it lacks any substance and generally goes on for weeks as the presupper will refuse to answer certain questions.


For example, these:


1) Are your senses infallible?

2) If you answer no to the above, please explain how you discriminate between the times when your senses are reliable and when they are not?

3) How do you distinguish between an actual revelation and an imaginary revelation?



He will probably ignore this, but if he shows up, he will refuse to answer my questions.

Just watch....


Oh and scmike, Sye left with his tail between his legs but, for the record, here are the questions Sye refused to answer so feel free to address them too (apologies for the Gish Gallop but these have all been previously asked individually with no answer):

Read More...

05 August, 2009

Email Scams - Or I'm a Triple Millionaire!!!!

I don't usually get spam in my email account. I don't know why as some of my friends with similar email accounts get hundreds a day. Anyway, a few months ago I received this email:

Dear Friend,

My name is Mr Clarence Edwin, an attorney at law chambers of Clarence
Edwin & Associates. A deceased client of mine whose name is the same last
name with you, who herein after shall be referred to as my client, died
together with his family on December 26 -2004 as a result of Tsunami Disaster.

I am contacting you because you have the same surname as my deceased client
and i felt that you could help me in the distribution of funding that were
left in my deceased client's bank account. This funding is closed to be
declared UN-serviceable by the bank as there were no indicated next of kin or
next of beneficiary of the funding in the bank account.

The total amount of cash in the bank account of my deceased client is
US$4.7 Million ( Four Million Seven Hundred Thousand United States Dollar )
only. The bank had issued to me a notification to contact the next of kin of
my deceased client or account will be confiscated.

My proposition to you is to seek your consent, and to present your kind self
as the next-of-kin and beneficiary of my deceased client, since you have the
same last name with him. This means that the proceeds of his bank account
would be paid to you as his next of kin or the legitimate beneficiary. We
would share the percentage on a mutually agreed-upon 60% for me and 40% to
your kind self.

All the legal documents to back up the claim as my client's next-of-kin would
be provided by me. This will be executed under a legitimate arrangement that
would protect you from any breach of the law.

If this business proposition offends your moral and ethic values, do accept
my sincere apology. I must use this opportunity to implore you to exercise
the utmost indulgence to keep this matter extraordinary confidential, whatever
your decision, while I await your prompt response. Please contact me, if your
interested by replying the mail or ignore it if you are not.

Best regards,
Barrister Clarence Edwin
info.georgenelson@gmail.com

Obviously after the first sentence or two I knew it was a scam, but I decided to respond anyway:

Read More...

04 August, 2009

Ricky Gervais Explains an Alternative Theory

30 July, 2009

Swine Flu Vaccine - Priorities Wrong?

In the current edition of Nature (30 July 2009) there is a short correspondence from Italian immunologists on the subject of a swine flu vaccine.

I think it conveys an important message.

In the piece entitled "Flu: vaccinate to cut risk of chimaeric virus emerging", Ilaria Capua & Giovanni Cattoli from the Istituto Zooprofilattico Sperimentale delle Venezie in Italy, make the suggestion that any decisions on priority distribution of swine flu vaccine should take into account areas at higher risk of the emergence of a reassortment virus. This is a virus containing an assortment of genes from various different viruses and can occur in geographic locations where different human and animal viruses are simultaneously present

There is a risk of generating novel influenza A viruses through reassortment of the eight genes that result in antigenic shift, which would give rise to strains to which the human population has no immunity. For example, reassortment occurred between avian and human influenza viruses to create the human pandemic viruses of 1957 and 1968

Developing countries are breeding grounds for these types of reassortment viruses due to inadequate security and safety measures. Based on this, the authors indicate that along with the vaccination of risk patients and healthcare workers, emphasis should be placed on vaccinating populations in developing countries.

Fast-tracking vaccination of humans against pandemic influenza in developing countries where zoonotic flu in poultry is endemic would help prevent reassortment between naoH1N1 or other novel pandemic influenza strains and avian influenza viruses. That would deflect the unpredictable and serious consequences of viral reassortment to humankind worldwide.

So it is vital that we think on a bigger scale here. Undoubtedly each government has prioritised the vaccination of it's own citizens (here in Ireland they are apparently buying two doses per person), however the global community needs to think outside the box and firstly prevent the emergence of reassortment viruses. This constitutes a far greater risk to the human race and must be addressed immediately.